Merge pull request #160 from sgotti/datamanager_remove_old_data_files

datamanager: clean old data files

internal/datamanager/data.go

@@ -16,10 +16,13 @@ package datamanager
 
 import (
 	"bytes"
+	"container/ring"
 	"context"
 	"encoding/json"
 	"fmt"
 	"io"
+	"path"
+	"regexp"
 	"sort"
 	"strings"
 
@@ -32,6 +35,12 @@ import (
 
 const (
 	DefaultMaxDataFileSize = 10 * 1024 * 1024
+	dataStatusToKeep       = 3
+)
+
+var (
+	DataFileRegexp       = regexp.MustCompile(`^([a-zA-Z0-9]+-[a-zA-Z0-9]+)-([a-zA-Z0-9-]+)\.(data|index)$`)
+	DataStatusFileRegexp = regexp.MustCompile(`^([a-zA-Z0-9]+-[a-zA-Z0-9]+)\.status$`)
 )
 
 type DataStatus struct {
@@ -527,33 +536,49 @@ func (d *DataManager) Read(dataType, id string) (io.Reader, error) {
 	return bytes.NewReader(de.Data), nil
 }
 
-func (d *DataManager) GetLastDataStatusPath() (string, error) {
+func (d *DataManager) GetLastDataStatusSequences(n int) ([]*sequence.Sequence, error) {
+	if n < 1 {
+		return nil, errors.Errorf("n must be greater than 0")
+	}
+	r := ring.New(n)
+	re := r
+
 	doneCh := make(chan struct{})
 	defer close(doneCh)
 
-	var dataStatusPath string
 	for object := range d.ost.List(d.storageDataDir()+"/", "", false, doneCh) {
 		if object.Err != nil {
-			return "", object.Err
+			return nil, object.Err
 		}
-		if strings.HasSuffix(object.Path, ".status") {
+		if m := DataStatusFileRegexp.FindStringSubmatch(path.Base(object.Path)); m != nil {
-			dataStatusPath = object.Path
+			seq, err := sequence.Parse(m[1])
+			if err != nil {
+				d.log.Warnf("cannot parse sequence for data status file %q", object.Path)
+				continue
 			}
+			re.Value = seq
+			re = re.Next()
+		} else {
+			d.log.Warnf("bad file %q found in storage data dir", object.Path)
 		}
-	if dataStatusPath == "" {
-		return "", ostypes.ErrNotExist
 	}
 
-	return dataStatusPath, nil
+	dataStatusSequences := []*sequence.Sequence{}
+	re.Do(func(x interface{}) {
+		if x != nil {
+			dataStatusSequences = append([]*sequence.Sequence{x.(*sequence.Sequence)}, dataStatusSequences...)
+		}
+	})
+
+	if len(dataStatusSequences) == 0 {
+		return nil, ostypes.ErrNotExist
+	}
+
+	return dataStatusSequences, nil
 }
 
-func (d *DataManager) GetLastDataStatus() (*DataStatus, error) {
+func (d *DataManager) GetDataStatus(dataSequence *sequence.Sequence) (*DataStatus, error) {
-	dataStatusPath, err := d.GetLastDataStatusPath()
+	dataStatusf, err := d.ost.ReadObject(d.dataStatusPath(dataSequence))
-	if err != nil {
-		return nil, err
-	}
-
-	dataStatusf, err := d.ost.ReadObject(dataStatusPath)
 	if err != nil {
 		return nil, err
 	}
@@ -564,6 +589,24 @@ func (d *DataManager) GetLastDataStatus() (*DataStatus, error) {
 	return dataStatus, dec.Decode(&dataStatus)
 }
 
+func (d *DataManager) GetLastDataStatusSequence() (*sequence.Sequence, error) {
+	dataStatusSequences, err := d.GetLastDataStatusSequences(1)
+	if err != nil {
+		return nil, err
+	}
+
+	return dataStatusSequences[0], nil
+}
+
+func (d *DataManager) GetLastDataStatus() (*DataStatus, error) {
+	dataStatusSequence, err := d.GetLastDataStatusSequence()
+	if err != nil {
+		return nil, err
+	}
+
+	return d.GetDataStatus(dataStatusSequence)
+}
+
 func (d *DataManager) Export(ctx context.Context, w io.Writer) error {
 	if err := d.checkpoint(ctx, true); err != nil {
 		return err
@@ -725,3 +768,126 @@ func (d *DataManager) Import(ctx context.Context, r io.Reader) error {
 
 	return nil
 }
+
+func (d *DataManager) CleanOldCheckpoints(ctx context.Context) error {
+	dataStatusSequences, err := d.GetLastDataStatusSequences(dataStatusToKeep)
+	if err != nil {
+		return err
+	}
+
+	return d.cleanOldCheckpoints(ctx, dataStatusSequences)
+}
+
+func (d *DataManager) cleanOldCheckpoints(ctx context.Context, dataStatusSequences []*sequence.Sequence) error {
+	if len(dataStatusSequences) == 0 {
+		return nil
+	}
+
+	lastDataStatusSequence := dataStatusSequences[0]
+
+	// Remove old data status paths
+	if len(dataStatusSequences) >= dataStatusToKeep {
+		dataStatusPathsMap := map[string]struct{}{}
+		for _, seq := range dataStatusSequences {
+			dataStatusPathsMap[d.dataStatusPath(seq)] = struct{}{}
+		}
+
+		doneCh := make(chan struct{})
+		defer close(doneCh)
+		for object := range d.ost.List(d.storageDataDir()+"/", "", false, doneCh) {
+			if object.Err != nil {
+				return object.Err
+			}
+
+			skip := false
+			if m := DataStatusFileRegexp.FindStringSubmatch(path.Base(object.Path)); m != nil {
+				seq, err := sequence.Parse(m[1])
+				if err == nil && seq.String() > lastDataStatusSequence.String() {
+					d.log.Infof("skipping file %q since its sequence is greater than %q", object.Path, lastDataStatusSequence)
+					skip = true
+				}
+			}
+			if skip {
+				continue
+			}
+
+			if _, ok := dataStatusPathsMap[object.Path]; !ok {
+				d.log.Infof("removing %q", object.Path)
+				if err := d.ost.DeleteObject(object.Path); err != nil {
+					if err != ostypes.ErrNotExist {
+						return err
+					}
+				}
+			}
+		}
+	}
+
+	// A list of files to keep
+	files := map[string]struct{}{}
+
+	for _, dataStatusSequence := range dataStatusSequences {
+		dataStatus, err := d.GetDataStatus(dataStatusSequence)
+		if err != nil {
+			return err
+		}
+
+		for dataType := range dataStatus.Files {
+			for _, file := range dataStatus.Files[dataType] {
+				files[d.DataFileBasePath(dataType, file.ID)] = struct{}{}
+			}
+		}
+	}
+
+	doneCh := make(chan struct{})
+	defer close(doneCh)
+
+	for object := range d.ost.List(d.storageDataDir()+"/", "", true, doneCh) {
+		if object.Err != nil {
+			return object.Err
+		}
+
+		p := object.Path
+		// object file relative to the storageDataDir
+		pr := strings.TrimPrefix(p, d.storageDataDir()+"/")
+		// object file full path without final extension
+		pne := strings.TrimSuffix(p, path.Ext(p))
+		// object file base name
+		pb := path.Base(p)
+
+		// skip status files
+		if !strings.Contains(pr, "/") && strings.HasSuffix(pr, ".status") {
+			continue
+		}
+
+		// skip data files with a sequence greater than the last known sequence.
+		// this is to avoid possible conditions where there's a Clean concurrent
+		// with a running Checkpoint (also if protect by etcd locks, they cannot
+		// enforce these kind of operations that are acting on resources
+		// external to etcd during network errors) that will remove the objects
+		// created by this checkpoint since the data status file doesn't yet
+		// exist.
+		skip := false
+		// extract the data sequence from the object name
+		if m := DataFileRegexp.FindStringSubmatch(pb); m != nil {
+			seq, err := sequence.Parse(m[1])
+			if err == nil && seq.String() > lastDataStatusSequence.String() {
+				d.log.Infof("skipping file %q since its sequence is greater than %q", p, lastDataStatusSequence)
+				skip = true
+			}
+		}
+		if skip {
+			continue
+		}
+
+		if _, ok := files[pne]; !ok {
+			d.log.Infof("removing %q", object.Path)
+			if err := d.ost.DeleteObject(object.Path); err != nil {
+				if err != ostypes.ErrNotExist {
+					return err
+				}
+			}
+		}
+	}
+
+	return nil
+}

internal/datamanager/datamanager.go

@@ -35,6 +35,7 @@ import (
 
 const (
 	DefaultCheckpointInterval      = 10 * time.Second
+	DefaultCheckpointCleanInterval = 5 * time.Minute
 	DefaultEtcdWalsKeepNum         = 100
 	DefaultMinCheckpointWalsNum    = 100
 )
@@ -85,6 +86,7 @@ type DataManagerConfig struct {
 	DataTypes               []string
 	EtcdWalsKeepNum         int
 	CheckpointInterval      time.Duration
+	CheckpointCleanInterval time.Duration
 	// MinCheckpointWalsNum is the minimum number of wals required before doing a checkpoint
 	MinCheckpointWalsNum int
 	MaxDataFileSize      int64
@@ -100,6 +102,7 @@ type DataManager struct {
 	dataTypes               []string
 	etcdWalsKeepNum         int
 	checkpointInterval      time.Duration
+	checkpointCleanInterval time.Duration
 	minCheckpointWalsNum    int
 	maxDataFileSize         int64
 	maintenanceMode         bool
@@ -115,6 +118,9 @@ func NewDataManager(ctx context.Context, logger *zap.Logger, conf *DataManagerCo
 	if conf.CheckpointInterval == 0 {
 		conf.CheckpointInterval = DefaultCheckpointInterval
 	}
+	if conf.CheckpointCleanInterval == 0 {
+		conf.CheckpointCleanInterval = DefaultCheckpointCleanInterval
+	}
 	if conf.MinCheckpointWalsNum == 0 {
 		conf.MinCheckpointWalsNum = DefaultMinCheckpointWalsNum
 	}
@@ -134,6 +140,7 @@ func NewDataManager(ctx context.Context, logger *zap.Logger, conf *DataManagerCo
 		dataTypes:               conf.DataTypes,
 		etcdWalsKeepNum:         conf.EtcdWalsKeepNum,
 		checkpointInterval:      conf.CheckpointInterval,
+		checkpointCleanInterval: conf.CheckpointCleanInterval,
 		minCheckpointWalsNum:    conf.MinCheckpointWalsNum,
 		maxDataFileSize:         conf.MaxDataFileSize,
 		maintenanceMode:         conf.MaintenanceMode,
@@ -231,6 +238,7 @@ func (d *DataManager) Run(ctx context.Context, readyCh chan struct{}) error {
 		go d.watcherLoop(ctx)
 		go d.syncLoop(ctx)
 		go d.checkpointLoop(ctx)
+		go d.checkpointCleanLoop(ctx)
 		go d.walCleanerLoop(ctx)
 		go d.compactChangeGroupsLoop(ctx)
 		go d.etcdPingerLoop(ctx)

internal/datamanager/datamanager_test.go

@@ -32,6 +32,7 @@ import (
 	"agola.io/agola/internal/objectstorage/posix"
 	ostypes "agola.io/agola/internal/objectstorage/types"
 	"agola.io/agola/internal/testutil"
+	"github.com/google/go-cmp/cmp"
 
 	"go.uber.org/zap"
 	"go.uber.org/zap/zapcore"
@@ -501,6 +502,110 @@ func doAndCheckCheckpoint(t *testing.T, ctx context.Context, dm *DataManager, ac
 	return expectedEntries, nil
 }
 
+func checkDataFiles(ctx context.Context, t *testing.T, dm *DataManager, expectedEntriesMap map[string]*DataEntry) error {
+	// read the data file
+	curDataStatus, err := dm.GetLastDataStatus()
+	if err != nil {
+		return err
+	}
+
+	allEntriesMap := map[string]*DataEntry{}
+
+	for dataType := range curDataStatus.Files {
+		var prevLastEntryID string
+		for i, file := range curDataStatus.Files[dataType] {
+			dataFileIndexf, err := dm.ost.ReadObject(dm.DataFileIndexPath(dataType, file.ID))
+			if err != nil {
+				return err
+			}
+			var dataFileIndex *DataFileIndex
+			dec := json.NewDecoder(dataFileIndexf)
+			err = dec.Decode(&dataFileIndex)
+			if err != nil {
+				dataFileIndexf.Close()
+				return err
+			}
+
+			dataFileIndexf.Close()
+			dataEntriesMap := map[string]*DataEntry{}
+			dataEntries := []*DataEntry{}
+			dataf, err := dm.ost.ReadObject(dm.DataFilePath(dataType, file.ID))
+			if err != nil {
+				return err
+			}
+			dec = json.NewDecoder(dataf)
+			var prevEntryID string
+			for {
+				var de *DataEntry
+
+				err := dec.Decode(&de)
+				if err == io.EOF {
+					// all done
+					break
+				}
+				if err != nil {
+					dataf.Close()
+					return err
+				}
+				// check that there are no duplicate entries
+				if _, ok := allEntriesMap[de.ID]; ok {
+					return fmt.Errorf("duplicate entry id: %s", de.ID)
+				}
+				// check that the entries are in order
+				if de.ID < prevEntryID {
+					return fmt.Errorf("previous entry id: %s greater than entry id: %s", prevEntryID, de.ID)
+				}
+
+				dataEntriesMap[de.ID] = de
+				dataEntries = append(dataEntries, de)
+				allEntriesMap[de.ID] = de
+			}
+			dataf.Close()
+
+			// check that the index matches the entries
+			if len(dataFileIndex.Index) != len(dataEntriesMap) {
+				return fmt.Errorf("index entries: %d different than data entries: %d", len(dataFileIndex.Index), len(dataEntriesMap))
+			}
+			indexIDs := make([]string, len(dataFileIndex.Index))
+			entriesIDs := make([]string, len(dataEntriesMap))
+			for id := range dataFileIndex.Index {
+				indexIDs = append(indexIDs, id)
+			}
+			for id := range dataEntriesMap {
+				entriesIDs = append(entriesIDs, id)
+			}
+			sort.Strings(indexIDs)
+			sort.Strings(entriesIDs)
+			if !reflect.DeepEqual(indexIDs, entriesIDs) {
+				return fmt.Errorf("index entries ids don't match data entries ids: index: %v, data: %v", indexIDs, entriesIDs)
+			}
+
+			if file.LastEntryID != dataEntries[len(dataEntries)-1].ID {
+				return fmt.Errorf("lastEntryID for datafile %d: %s is different than real last entry id: %s", i, file.LastEntryID, dataEntries[len(dataEntries)-1].ID)
+			}
+
+			// check that all the files are in order
+			if file.LastEntryID == prevLastEntryID {
+				return fmt.Errorf("lastEntryID for datafile %d is equal than previous file lastEntryID: %s == %s", i, file.LastEntryID, prevLastEntryID)
+			}
+			if file.LastEntryID < prevLastEntryID {
+				return fmt.Errorf("lastEntryID for datafile %d is less than previous file lastEntryID: %s < %s", i, file.LastEntryID, prevLastEntryID)
+			}
+			prevLastEntryID = file.LastEntryID
+		}
+	}
+
+	// check that the number of entries is right
+	if len(allEntriesMap) != len(expectedEntriesMap) {
+		return fmt.Errorf("expected %d total entries, got %d", len(expectedEntriesMap), len(allEntriesMap))
+	}
+	if !reflect.DeepEqual(expectedEntriesMap, allEntriesMap) {
+		return fmt.Errorf("expected entries don't match current entries")
+	}
+
+	return nil
+}
+
 // TODO(sgotti) some fuzzy testing will be really good
 func TestCheckpoint(t *testing.T) {
 	tests := []struct {
@@ -734,6 +839,10 @@ func testCheckpoint(t *testing.T, basePath string) {
 	if err != nil {
 		t.Fatalf("unexpected err: %v", err)
 	}
+
+	if err := dm.CleanOldCheckpoints(ctx); err != nil {
+		t.Fatalf("unexpected err: %v", err)
+	}
 }
 
 func TestRead(t *testing.T) {
@@ -828,108 +937,251 @@ func TestRead(t *testing.T) {
 	}
 }
 
-func checkDataFiles(ctx context.Context, t *testing.T, dm *DataManager, expectedEntriesMap map[string]*DataEntry) error {
+func TestClean(t *testing.T) {
-	// read the data file
+	tests := []struct {
+		name     string
+		basePath string
+	}{
+		{
+			name:     "test with empty basepath",
+			basePath: "",
+		},
+		{
+			name:     "test with relative basepath",
+			basePath: "base/path",
+		},
+	}
+
+	for _, tt := range tests {
+		t.Run(tt.name, func(t *testing.T) {
+			testClean(t, tt.basePath)
+		})
+	}
+}
+
+func testClean(t *testing.T, basePath string) {
+	dir, err := ioutil.TempDir("", "agola")
+	if err != nil {
+		t.Fatalf("unexpected err: %v", err)
+	}
+	defer os.RemoveAll(dir)
+
+	etcdDir, err := ioutil.TempDir(dir, "etcd")
+	if err != nil {
+		t.Fatalf("unexpected err: %v", err)
+	}
+	tetcd := setupEtcd(t, etcdDir)
+	defer shutdownEtcd(tetcd)
+
+	ctx := context.Background()
+
+	ostDir, err := ioutil.TempDir(dir, "ost")
+	if err != nil {
+		t.Fatalf("unexpected err: %v", err)
+	}
+	ost, err := posix.New(ostDir)
+	if err != nil {
+		t.Fatalf("unexpected err: %v", err)
+	}
+
+	dmConfig := &DataManagerConfig{
+		BasePath: basePath,
+		E:        tetcd.TestEtcd.Store,
+		OST:      objectstorage.NewObjStorage(ost, "/"),
+		// remove almost all wals to see that they are removed also from changes
+		EtcdWalsKeepNum: 1,
+		DataTypes:       []string{"datatype01"},
+		// checkpoint also with only one wal
+		MinCheckpointWalsNum: 1,
+		// use a small maxDataFileSize
+		MaxDataFileSize: 10 * 1024,
+	}
+	dm, err := NewDataManager(ctx, logger, dmConfig)
+	if err != nil {
+		t.Fatalf("unexpected err: %v", err)
+	}
+	dmReadyCh := make(chan struct{})
+	go func() { _ = dm.Run(ctx, dmReadyCh) }()
+	<-dmReadyCh
+
+	time.Sleep(5 * time.Second)
+
+	contents := "aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa"
+
+	var currentEntries map[string]*DataEntry
+	actions := []*Action{}
+	for n := 0; n < 10; n++ {
+		for i := 0; i < 400; i++ {
+			action := &Action{
+				ActionType: ActionTypePut,
+				ID:         fmt.Sprintf("object%04d", i),
+				DataType:   "datatype01",
+				Data:       []byte(fmt.Sprintf(`{ "ID": "%d", "Contents": %s }`, i, contents)),
+			}
+			actions = append(actions, action)
+		}
+
+		currentEntries, err = doAndCheckCheckpoint(t, ctx, dm, [][]*Action{actions}, currentEntries)
+		if err != nil {
+			t.Fatalf("unexpected err: %v", err)
+		}
+	}
+
+	// get the last data status sequence
+	lastDataStatusSequences, err := dm.GetLastDataStatusSequences(dataStatusToKeep)
+	if err != nil {
+		t.Fatalf("unexpected err: %v", err)
+	}
+
+	if err := dm.CleanOldCheckpoints(ctx); err != nil {
+		t.Fatalf("unexpected err: %v", err)
+	}
+
+	// check last data file
+	if err := checkDataFiles(ctx, t, dm, currentEntries); err != nil {
+		t.Fatalf("unexpected err: %v", err)
+	}
+
+	// check that only the last dataStatusToKeep status files are left
+	curDataStatusSequences, err := dm.GetLastDataStatusSequences(1000)
+	if err != nil {
+		t.Fatalf("unexpected err: %v", err)
+	}
+	if len(curDataStatusSequences) != dataStatusToKeep {
+		t.Fatalf("expected %d data status files, got %d: %s", dataStatusToKeep, len(curDataStatusSequences), curDataStatusSequences)
+	}
+	if diff := cmp.Diff(lastDataStatusSequences, curDataStatusSequences); diff != "" {
+		t.Fatalf("different data status sequences: %v", diff)
+	}
+}
+
+func TestCleanConcurrentCheckpoint(t *testing.T) {
+	tests := []struct {
+		name     string
+		basePath string
+	}{
+		{
+			name:     "test with empty basepath",
+			basePath: "",
+		},
+		{
+			name:     "test with relative basepath",
+			basePath: "base/path",
+		},
+	}
+
+	for _, tt := range tests {
+		t.Run(tt.name, func(t *testing.T) {
+			testCleanConcurrentCheckpoint(t, tt.basePath)
+		})
+	}
+}
+
+func testCleanConcurrentCheckpoint(t *testing.T, basePath string) {
+	dir, err := ioutil.TempDir("", "agola")
+	if err != nil {
+		t.Fatalf("unexpected err: %v", err)
+	}
+	defer os.RemoveAll(dir)
+
+	etcdDir, err := ioutil.TempDir(dir, "etcd")
+	if err != nil {
+		t.Fatalf("unexpected err: %v", err)
+	}
+	tetcd := setupEtcd(t, etcdDir)
+	defer shutdownEtcd(tetcd)
+
+	ctx := context.Background()
+
+	ostDir, err := ioutil.TempDir(dir, "ost")
+	if err != nil {
+		t.Fatalf("unexpected err: %v", err)
+	}
+	ost, err := posix.New(ostDir)
+	if err != nil {
+		t.Fatalf("unexpected err: %v", err)
+	}
+
+	dmConfig := &DataManagerConfig{
+		BasePath: basePath,
+		E:        tetcd.TestEtcd.Store,
+		OST:      objectstorage.NewObjStorage(ost, "/"),
+		// remove almost all wals to see that they are removed also from changes
+		EtcdWalsKeepNum: 1,
+		DataTypes:       []string{"datatype01"},
+		// checkpoint also with only one wal
+		MinCheckpointWalsNum: 1,
+		// use a small maxDataFileSize
+		MaxDataFileSize: 10 * 1024,
+	}
+	dm, err := NewDataManager(ctx, logger, dmConfig)
+	if err != nil {
+		t.Fatalf("unexpected err: %v", err)
+	}
+	dmReadyCh := make(chan struct{})
+	go func() { _ = dm.Run(ctx, dmReadyCh) }()
+	<-dmReadyCh
+
+	time.Sleep(5 * time.Second)
+
+	contents := "aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa"
+
+	var currentEntries map[string]*DataEntry
+	actions := []*Action{}
+	for n := 0; n < 10; n++ {
+		for i := 0; i < 400; i++ {
+			action := &Action{
+				ActionType: ActionTypePut,
+				ID:         fmt.Sprintf("object%04d", i),
+				DataType:   "datatype01",
+				Data:       []byte(fmt.Sprintf(`{ "ID": "%d", "Contents": %s }`, i, contents)),
+			}
+			actions = append(actions, action)
+		}
+
+		currentEntries, err = doAndCheckCheckpoint(t, ctx, dm, [][]*Action{actions}, currentEntries)
+		if err != nil {
+			t.Fatalf("unexpected err: %v", err)
+		}
+	}
+
+	// get the current last data status sequences before doing other actions and checkpoints
+	dataStatusSequences, err := dm.GetLastDataStatusSequences(dataStatusToKeep)
+	if err != nil {
+		t.Fatalf("unexpected err: %v", err)
+	}
+
+	for i := 0; i < 400; i++ {
+		action := &Action{
+			ActionType: ActionTypePut,
+			ID:         fmt.Sprintf("object%04d", i),
+			DataType:   "datatype01",
+			Data:       []byte(fmt.Sprintf(`{ "ID": "%d", "Contents": %s }`, i, contents)),
+		}
+		actions = append(actions, action)
+	}
+
+	if _, err = doAndCheckCheckpoint(t, ctx, dm, [][]*Action{actions}, currentEntries); err != nil {
+		t.Fatalf("unexpected err: %v", err)
+	}
+
+	if err := dm.cleanOldCheckpoints(ctx, dataStatusSequences); err != nil {
+		t.Fatalf("unexpected err: %v", err)
+	}
+
+	// check the datastatus after clean
 	curDataStatus, err := dm.GetLastDataStatus()
 	if err != nil {
-		return err
+		t.Fatalf("unexpected err: %v", err)
+	}
+	if curDataStatus.DataSequence <= dataStatusSequences[0].String() {
+		t.Fatalf("expected data status sequence greater than %q", dataStatusSequences[0])
 	}
 
-	allEntriesMap := map[string]*DataEntry{}
+	// check last data file
-
+	if err := checkDataFiles(ctx, t, dm, currentEntries); err != nil {
-	for dataType := range curDataStatus.Files {
+		t.Fatalf("unexpected err: %v", err)
-		var prevLastEntryID string
-		for i, file := range curDataStatus.Files[dataType] {
-			dataFileIndexf, err := dm.ost.ReadObject(dm.DataFileIndexPath(dataType, file.ID))
-			if err != nil {
-				return err
 	}
-			var dataFileIndex *DataFileIndex
-			dec := json.NewDecoder(dataFileIndexf)
-			err = dec.Decode(&dataFileIndex)
-			if err != nil {
-				dataFileIndexf.Close()
-				return err
-			}
-
-			dataFileIndexf.Close()
-			dataEntriesMap := map[string]*DataEntry{}
-			dataEntries := []*DataEntry{}
-			dataf, err := dm.ost.ReadObject(dm.DataFilePath(dataType, file.ID))
-			if err != nil {
-				return err
-			}
-			dec = json.NewDecoder(dataf)
-			var prevEntryID string
-			for {
-				var de *DataEntry
-
-				err := dec.Decode(&de)
-				if err == io.EOF {
-					// all done
-					break
-				}
-				if err != nil {
-					dataf.Close()
-					return err
-				}
-				// check that there are no duplicate entries
-				if _, ok := allEntriesMap[de.ID]; ok {
-					return fmt.Errorf("duplicate entry id: %s", de.ID)
-				}
-				// check that the entries are in order
-				if de.ID < prevEntryID {
-					return fmt.Errorf("previous entry id: %s greater than entry id: %s", prevEntryID, de.ID)
-				}
-
-				dataEntriesMap[de.ID] = de
-				dataEntries = append(dataEntries, de)
-				allEntriesMap[de.ID] = de
-			}
-			dataf.Close()
-
-			// check that the index matches the entries
-			if len(dataFileIndex.Index) != len(dataEntriesMap) {
-				return fmt.Errorf("index entries: %d different than data entries: %d", len(dataFileIndex.Index), len(dataEntriesMap))
-			}
-			indexIDs := make([]string, len(dataFileIndex.Index))
-			entriesIDs := make([]string, len(dataEntriesMap))
-			for id := range dataFileIndex.Index {
-				indexIDs = append(indexIDs, id)
-			}
-			for id := range dataEntriesMap {
-				entriesIDs = append(entriesIDs, id)
-			}
-			sort.Strings(indexIDs)
-			sort.Strings(entriesIDs)
-			if !reflect.DeepEqual(indexIDs, entriesIDs) {
-				return fmt.Errorf("index entries ids don't match data entries ids: index: %v, data: %v", indexIDs, entriesIDs)
-			}
-
-			if file.LastEntryID != dataEntries[len(dataEntries)-1].ID {
-				return fmt.Errorf("lastEntryID for datafile %d: %s is different than real last entry id: %s", i, file.LastEntryID, dataEntries[len(dataEntries)-1].ID)
-			}
-
-			// check that all the files are in order
-			if file.LastEntryID == prevLastEntryID {
-				return fmt.Errorf("lastEntryID for datafile %d is equal than previous file lastEntryID: %s == %s", i, file.LastEntryID, prevLastEntryID)
-			}
-			if file.LastEntryID < prevLastEntryID {
-				return fmt.Errorf("lastEntryID for datafile %d is less than previous file lastEntryID: %s < %s", i, file.LastEntryID, prevLastEntryID)
-			}
-			prevLastEntryID = file.LastEntryID
-		}
-	}
-
-	// check that the number of entries is right
-	if len(allEntriesMap) != len(expectedEntriesMap) {
-		return fmt.Errorf("expected %d total entries, got %d", len(expectedEntriesMap), len(allEntriesMap))
-	}
-	if !reflect.DeepEqual(expectedEntriesMap, allEntriesMap) {
-		return fmt.Errorf("expected entries don't match current entries")
-	}
-
-	return nil
 }
 
 func TestExportImport(t *testing.T) {

internal/datamanager/wal.go

@@ -721,6 +721,46 @@ func (d *DataManager) checkpoint(ctx context.Context, force bool) error {
 	return nil
 }
 
+func (d *DataManager) checkpointCleanLoop(ctx context.Context) {
+	for {
+		d.log.Debugf("checkpointCleanLoop")
+		if err := d.checkpointClean(ctx); err != nil {
+			d.log.Errorf("checkpointClean error: %v", err)
+		}
+
+		sleepCh := time.NewTimer(d.checkpointCleanInterval).C
+		select {
+		case <-ctx.Done():
+			return
+		case <-sleepCh:
+		}
+	}
+}
+
+func (d *DataManager) checkpointClean(ctx context.Context) error {
+	session, err := concurrency.NewSession(d.e.Client(), concurrency.WithTTL(5), concurrency.WithContext(ctx))
+	if err != nil {
+		return err
+	}
+	defer session.Close()
+
+	m := concurrency.NewMutex(session, etcdCheckpointLockKey)
+
+	// TODO(sgotti) find a way to use a trylock so we'll just return if already
+	// locked. Currently multiple task updaters will enqueue and start when another
+	// finishes (unuseful and consume resources)
+	if err := m.Lock(ctx); err != nil {
+		return err
+	}
+	defer func() { _ = m.Unlock(ctx) }()
+
+	if err := d.CleanOldCheckpoints(ctx); err != nil {
+		return err
+	}
+
+	return nil
+}
+
 func (d *DataManager) walCleanerLoop(ctx context.Context) {
 	for {
 		d.log.Debugf("walcleaner")